BIOC460 Lectures

Lecture Materials - 2008

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Updated on 5/5/08

• Instructions for viewing molecular graphics (Jmol) routines linked in html notes
• List of molecular structures rendered in Jmol here in the BMB Dept.

Date	Lecture	Topic	Lecture Notes	6th ed. Chapter, pp.	green 5th ed. Chapter, pp.	Instructor
W - Jan 16	1	Introduction, Properties of Water Gen chem review session, offered twice (optional, since it's review, but material is required): Thurs. Jan. 17, 4:00-5:00 pm, (Chavez 111); and Friday Jan. 18 right after class, 4:00-5:00 pm (ILC 120)	lecture notes [PDF-2] logarithms review gen chem review (for gen chem review session after class Thurs. or Fri.)	1	1; 2, pp. 73-74	Dr. Ziegler
F - Jan 18	2	Biological Thermodynamics	lecture notes [PDF-2] gen chem review (for gen chem review session after class) ThermoPracticeProblems	pp. 11-14 & 208-210	pp. 11-14 & 193-194	Dr. Ziegler
M - Jan 21		MLK Holiday - NO CLASS	MLK Holiday - NO CLASS
W - Jan 23	3	Amino Acids	lecture notes [PDF-2] excellent website for learning AA structures and properties	2, pp. 25-34	3, pp. 41-51	Dr. Ziegler
F - Jan 25	4	Peptides	lecture notes [PDF-2] [PDF-6] PeptidepHPracticeProblems	2, pp. 34-37	3, pp. 51-56	Dr. Ziegler
M - Jan 28	5	Proteins, Secondary Structure	lecture notes [PDF-2] [PDF-6]	2, pp. 37-45	3, pp. 56-61	Dr. Ziegler
W - Jan 30	6	Proteins: Tertiary and Quaternary Structure	lecture notes [PDF-2] [PDF-6]	2, pp. 44-53 pp. 61-62	3, pp. 61-64; 12, 337-338	Dr. Ziegler
F - Feb 1	7	Proteins: Folding; *Quiz 1*	lecture notes [PDF-2] [PDF-6]	2, pp. 53-60	3, pp. 64-72	Dr. Ziegler
M - Feb 4	8	Protein Function: Myoglobin and Hemoglobin 1	lecture notes [PDF-2] [PDF-6] (Chapter 7 is a new chapter in 6th edition of textbook.)	7, pp. 183-192	3, pp. 61-62; 10, pp. 268-274	Dr. Ziegler
W - Feb 6	9	Protein Function: Myoglobin and Hemoglobin 2	same notes as LEC 8	7, pp. 192-199	3, pp. 61-62; 10, pp. 268-274	Dr. Ziegler
*Th - Feb 7*		Review/Help Session, 4:00-5:00, EDUC 111				*Dr. Ziegler*
F - Feb 8	10	Enzymes: Introduction	lecture notes [PDF-2] [PDF-6] ThermoPracticeProblems Enz Introd Sample Problems	8, pp. 205-216	8, pp. 189-200	Dr. Ziegler
*M - Feb 11*		*EXAM 1*				*Dr. Ziegler*
W - Feb 13	11	Enzymes: Kinetics	lecture notes [PDF-2] [PDF-6]	8, pp. 216-225	8, pp. 200-208; pp. 221-222	Dr. Ziegler
F - Feb 15	12	Enzymes: Inhibition	lecture notes [PDF-2] [PDF-6]	8, pp. 225-236	8, pp. 209-221	Dr. Ziegler
M - Feb 18	13	Enzymes: Catalytic Strategies 1	lecture notes [PDF-2] [PDF-6]	9, pp. 241-254	9, pp. 227-239	Dr. Ziegler
W - Feb 20	14	Enzymes: Catalytic Strategies 2	(same notes as Lecture 13) movie of chymotrypsin mechanism	9, pp. 241-254	9, pp. 227-239	Dr. Ziegler
F - Feb 22	15	Regulatory Strategies: Allosteric Regulation, Isozymes	lecture notes [PDF-2] [PDF-6]	10, pp. 275-283	10, pp. 261-269	Dr. Ziegler
M - Feb 25	16	Regulatory Strategies: Reversible Covalent Modification	lecture notes [PDF-2] [PDF-6] [audio 2-25-08 (mp3 file)]	10, pp. 283-288	10, pp. 274-280	Dr. Ziegler
W - Feb 27	17	Regulatory Strategies: Regulatory Proteins, Proteolytic Cleavage	(same notes as Lecture 16) (no audio available)	14, pp. 389-391; 10, pp. 288-299	15, pp. 408-411; 10, pp. 280-291	Dr. Ziegler
F - Feb 29	18	Membranes: Lipids; *Quiz 2*	lecture notes [PDF-2] [PDF-6] [audio 2-29-08 (mp3 file)]	12, pp. 326-335	12, pp. 319-329	Dr. Ziegler
M - Mar 3	19	Membranes: Proteins	lecture notes [PDF-2] [PDF-6] [audio 3-3-08 (mp3 file)]	12, pp. 336-348	12, pp. 329-342	Dr. Ziegler
W - Mar 5	20	Membranes: Transport 1	lecture notes [PDF-2] [PDF-6] supplementary slides-free energy of ion transport [PDF] sample problems: free energy of ion transport [PDF] [audio 3-5-08 (mp3 file)]	13, pp. 351-376	13, pp. 345-365	Dr. Ziegler
*Th - Mar 6*		Review/Help Session, 4:00-5:00, Chavez 111				*Dr. Ziegler*
F - Mar 7	21	Membranes: Transport 2	same notes as Lecture 20 [audio 3-7-08 (mp3 file)]	13, pp. 351-376	13, pp. 345-365	Dr. Ziegler
*M - Mar 10*		*EXAM 2*				*Dr. Ziegler*
W - Mar 12	22	Signal Transduction Pathways 1	[audio 3-7-08 (mp3 file)] Powerpoint file Lecture 22 Supplement (Miesfeld 2005)	14, pp. 381-403	15, pp. 395-492	Dr. David Gang
F - Mar 14	23	Signal Transduction Pathways 2	[audio file for this lecture] Powerpoint file Lecture 23 Supplement (Miesfeld 2005)	(same as Lec 22)	(same as Lec 22)	Dr. David Gang
Mar 15-23		Spring Break
M - Mar 24	24	Bioenergetics and Metabolism	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	15, pp. 409-430 (review pp.11-14 & pp. 208-211)	14, pp. 373-392 (review pp. 11 -15, & pp. 193-197)	Dr. Miesfeld
W - Mar 26	25	Glycolysis 1: Glycolytic Pathway	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	11, pp. 303-308; 16, pp. 433-452	11, pp. 296-300; 16, pp. 424-443	Dr. Miesfeld
F - Mar 28	26	Glycolysis 2: Regulation of Glycolysis, Fate of Glycolytic Intermediates and Products	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	16, pp. 452-471	16, pp. 443-462	Dr. Miesfeld
M - Mar 31	27	Redox Reactions, Enzyme Cofactors and Pyruvate Dehydrogenase	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	15, pp. 420-430; 17, pp. 477-481; 18, pp. 506-509	14, pp. 382-392; 17,467-72; 18, pp. 494-498	Dr. Miesfeld
W - Apr 2	28	Citrate Cycle	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	17, pp. 475-498	17, pp. 465-487	Dr. Miesfeld
F - Apr 4	29	Electron Transport System; *Quiz 3*	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	18, pp. 502-520	18, pp. 491-507	Dr. Miesfeld
M - Apr 7	30	Oxidative Phosphorylation	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	18, pp. 520-537	18, pp. 507-523	Dr. Miesfeld
W - Apr 9	31	Photosynthetic Light Reactions and Photosynthetic Phosphorylation	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	19, pp. 541-562	19, pp. 527-548	Dr. Miesfeld
Th - Apr 10		Review/Help Session, 4:00-5:00, Chavez 111				*Dr. Miesfeld*
F - Apr 11	32	Photosynthesis: Calvin Cycle, C4 and CAM	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	20, pp. 565-577	20, pp. 551-563	Dr. Miesfeld
M - Apr 14		*EXAM 3*				*Dr. Miesfeld*
W - Apr 16	33	Carbohydrates 1: Pentose Phosphate Pathway and Gluconeogenesis	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	20, pp. 577-589	20, pp. 563-574	Dr. Miesfeld
F - Apr 18	34	Carbohydrates 2: Glycogen Metabolism	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	21, pp. 592-614	21, pp. 577-597	Dr. Miesfeld
M - Apr 21	35	Lipid Metabolism 1	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	22, pp. 617-634	22, pp. 601-617	Dr. Miesfeld
W - Apr 23	36	Lipid Metabolism 2	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	22, pp. 634-646	22, pp. 617-630	Dr. Miesfeld
F - Apr 25	37	Lipid Metabolism 3	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	26, pp. 739-756	26, pp. 722-740	Dr. Miesfeld
M - Apr 28	38	Amino Acid Metabolism 1; *Quiz 4*	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	23, pp. 649-676	23, pp. 633-659	Dr. Miesfeld
W - Apr 30	39	Amino Acid Metabolism 2	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	24, pp. 679-706	24, pp. 665-690	Dr. Miesfeld
F - May 2	40	Metabolic Integration 1	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	27, pp. 760-781	30, pp. 845-864	Dr. Miesfeld
M - May 5	41	Metabolic Integration 2	Lecture notes in ppt Student notes in ppt Supplemental notes in pdf	(same as Lec 40)	(same as Lec 40)	Dr. Miesfeld
M - May 5		Review/Help Session, 4:00-5:00, in reg. classroom (ILC 120)				*Dr. Miesfeld*
*W - May 7*		*EXAM 4 (3:00-3:50 pm, ILC 120)*				*Dr. Miesfeld*