Chime Routines and Animations

Molecular graphics | 462a Home

In order to fully utilize these web pages, your computer must use Netscape as its browser, because Explorer does not support Java Script.  In addition, you need a molecular graphics plugin called Chime. In order to view some of the animations you need the QuickTime movie player and the Shockwave plugins.  In order to print PDF files you will need the Adobe Acrobat Reader. You can download these programs by clicking on the links below.

Chime Routines

A DNA

A RNA

Actin

Actinomycin

Alpha Domain Proteins

Alpha helix properties

Alpha/Beta Domain Proteins

Antiparallel beta sheet properties

Arc Switch Protein

ATP

B DNA

Base Pairing

Beta Domain Proteins

Beta sheet

Bilayer structure

Bisphosphoglycerate-deoxy hemoglobin

Cholesterol

Chloroketone inhibited chymotrypsin

Cytochrome oxidase

Disaccharides

DNA Minor groove binding

Ethidium Bromide binding to DNA

Fatty acids

Glycoprotein structure

Gramicidin

Hemoglobin

Hemoglobin S

Heparin structure

Hexokinase

HIV Protease

Immunoglobulin-Antigen

Immunoglobulin Structure

Lectin structure

Lipase

Lysozyme

Monosaccharides

Myoglobin

Myosin

Novel domains

Nucleosome

Pancreatic trypsin inhibitor

Parallel beta sheet properties

Peptide Bond

Phosphatidylcholine

Phosphoglycerate kinase

Porin

Properties of Water

Protein domains

Protein structural motifs

Protein-DNA Interactions

Rhodopsin

RNA-binding (Gln-tRNA)

RNA-binding (Sex lethal)

RNA-binding (TRAP)

Secondary Structure Representations

Serine protease evolution

Serine proteases

Sheet_Helix Transition

Sidechain Localization

Silk

Sphingomyelin

T RNA

Transcription Factors

Transmembrane proteins

Triosephosphate isomerase

Tropomyosin

Troponin

Valinomycin

Z DNA

Zymogens

 

Green fluorescent protein (GFP)

Animations

Chromatography

Gel filtration

Phi/Psi rotation

Peptide backbone mobility

Protein folding

Heme movement upon oxygenation

Changes in oxygenation site upon oxygenation

Changes in subunit conformation upon oxygenation

Changes in subunit interface upon oxygenation

Overall conformational change upon oxygenation

Actin Myosin Movement

Carbohydrate mobility in a glycoprotein

Lipid diffusion in a bilayer

Dynamic properties of a bilayer

Flip-flop in a bilayer


Molecular graphics | 462a Home


Biochemistry 462a
http://www.biochem.arizona.edu/classes/bioc462/462a/462a.html
Department of Biochemistry and Molecular Biophysics
The University of Arizona
mawells@email.arizona.edu 
All contents copyright © 1998-2000. All rights reserved.
Last revised spring/summer 2000