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Molecular Graphics Project Information

Molecular Graphics Gallery link

Instructions: Molecular Graphics Project .pdf

Molecular Graphics Important Dates and Deadlines:

• Sept. 14, 15, and 16 in BSW 243 (computer lab) from 6 pm to 8 pm: Workshops for initial instruction on Jmol and developing a Jmol webpage:   The same material will be covered in each of these workshops, so only attend one due to limited seating.  A sign up sheet will be provided in class.
• By Oct. 2: meet with Dr. H to decide what protein will be subject of Jmol webpage.
• By Oct. 16: meet with Dr. H to show progress on Jmol script development.
• Nov. 6: all Jmol webpages, scripts, and jpegs must be submitted to Dr. H.
• Nov. 9: Jmol gallery will be created on course website.
• Dec. 4: submit grades for class mates Jmol webpages to Dr. H as a group.

As you can see, you will need to begin working on this project right away, do not put it off!

Jmol related material:

For all work with any web site using molecular graphics DO NOT USE INTERNET EXPLORER!!!! Firefox works very well. Mac users, you are on your own!!

The following are the "how to" files written by Daniel Martinez for virtually everything we could think you might have troubles with:

Sept. 29: Corrections were made to the instructions given in the pdf files listed below.

jmol_howto_dwnld.pdf: an explanation how to download and install jmol on your own computer.

MolGraph_folder.zip: downloadable folder containing pdb, *.txt, and jpeg files.

jmol_setup.pdf: setting up and using your MolGraph_folder files.

using_jmoljar.pdf: a "how to" manual for working with and within the jmol.jar editing window.

jmol_html.pdf: a printable version of the html template and an explanation of what needs to be changed in your final html page.

Jmol_Workshop.pdf: contains introductory information for the three evening workshops (Sept. 14, 15, 16) and very useful links for helpful websites.