#!rasmol -script
# File: LYS466.TXT
# Creator: RasMol Version 2.6

zap
background [0,0,0]
load pdb "1GLU.PDB"
set ambient 60
set specular off

reset
slab off
rotate z -175
rotate y 38
rotate x 158
translate x 49
translate y 40
zoom 400

define gua4 g4:c and not backbone
define guamin7 g-7:d and not backbone
define thy6 t6:c and not backbone
define thy5 t5:c and not backbone

restrict dna
color [75,75,75]
select thy6
color orange
spacefill 150
wireframe 50
select thy5
color red
spacefill 150
wireframe 50
select guamin7
color yellow
spacefill 150
wireframe 50
select gua4
color redorange
spacefill 150
wireframe 50
echo ""
echo "Four bases that make specific contacts are highlighted"
echo ""
echo "Hit a key to turn on an amino acid side chain that"
echo "makes a specific contact" 
pause
select 466:a
spacefill 150
wireframe 50
script "delay0.scr"
script "delay0.scr"
color [100,100,255]
script "delay0.scr"
echo ""
echo "Hit a key for a better view"
pause
select thy5,thy6,guamin7
spacefill off
wireframe
select 466:a and *.nh?
color [200,200,255]
select g4:c and (*.o6,*.n7)
color [255,200,150]
set monitors on
monitor 246 1538
monitor 245 1541

ssbonds off
hbonds off