Biochemistry 585

Biological Structure

Biomolecular NMR Spectroscopy Section
Second 3.5 Weeks: Solving NMR Structures/Advanced Techniques

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Date

Title

Reading

Homework,
Links & Info

Thursday
Feb 14, 2008

Catch up on Resonance Assignment Part II

no new reading
Problem set 1 due
Monday
Feb 18, 2008
Solving NMR Structures, Part I:
Experimentally Derived Structural Restraints

lecture slides (PPT file)
Wuthrich Nobel lecture p. 253-255
Sequential assignments handout,
up to end.
Wishart article (optional)

None
Tuesday
Feb 19, 2008
Solving NMR Structures, Part II:
Calculating and Evaluating Structures

lecture slides (PPT file)
Teng, Chapter 7

Computer lab 2 assignment due

(from Feb 12)

Thursday
Feb 21, 2008


Solving NMR structures Part II continued,

Intro to Calmodulin system

Calmodulin intro slides (PPT file)

Chin & Means review (optional)

Kuboniwa article (PDF)
Kuboniwa reading guide (PDF)


link to apo
calmodulin structure

Monday
Feb 25, 2006


Computer lab 3

Examining the apo-Calmodulin ensemble with MOLMOL

lab instructions handout in class;

bring Kuboniwa article along!

meet in BSW 243
Tuesday
Feb 26, 2006

Solving NMR Structures, Part III:
Use of residual dipolar couplings

Chou article
Chou reading guide
Tjandra et al (optional)
lecture slides (PPT),

see also Teng, p.28-32

None
Thursday
Feb 28, 2006

Special topics: Relaxation and protein
size, TROSY and deuteration

lecture notes handout p R1-R7
Wuthrich Nobel lecture, p. 258 to end,

see also Teng, p.35-42

None
Monday
Mar 3, 2008

Computer lab 4

Incompatible restraints in the linker region of calmodulin


handout distributed in class

meet in BSW 243
Tuesday Mar 4, 2008
Catch up on Thursday's material
none
 
Thursday Mar 6, 2008
Backbone dynamics
lecture notes handout p. D1-D6
Barbato article (PDF)
Barbato reading guide (PDF)
 
Monday Mar 10, 2008
Chemical and conformational exchange
midterm exercise (doc) (PDF)
Midterm due Mar 26

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Department of Biochemistry
The University of Arizona

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