Software Manuals

Crystallography Packages

• CCP4
• PHENIX
• CNS
• Solve manual, scripts, Resolve scripts
• SHELX hardcopy manual in 526. Hints! There is a FAQ
• Uppsala Software Gerard's documentation
• ARP/wARP (Automated Building)

Graphics, Figures

• PyMol Open source - Downloads, manual, reference Hints scripts
• COOT (structure building) Hints
• Chimera
• MIFit
• vmd
• ccp4mg

Other Computation, Data Bases

• modeller homology modeling
• Cambridge Structural Data Base (including mercury )
• Amber molecular dynamics (hpc)
• eman microscopic reconstruction
• namd molecular dynamics (django, hpc)
• delphi electrostatics
• rosetta